Assembly (Rs1.0) statistics
Number of chromosome | 9 |
---|---|
No. scaffolds | 11,389 |
Scaffold N50 (bp) | 927,251 |
No. contigs | 38,732 |
Contig N50 (bp) | 19,614 |
Total bases (bp) | 426,202,302 |
Gap (bp) | 54,594,566 |
Gene statistics
Number of gene | 46,514 |
---|---|
Avr. gene size (bp) | 1,754 |
Avr. exon size (bp) | 238 |
Avr. intron size (bp) | 147 |
No. exons per gene | 5 |
Longest gene (bp) | 203,142 |
Longest intron (bp) | 200,079 |
Repeat statistics
Number of elements | Length occupied (bp) | Percentage of sequence (%) | |
---|---|---|---|
Transposable Elements | 520,569 | 200,199,339 | 53.9 |
Telomere-related sequences | 6,094 | 1,193,236 | 0.3 |
Centromere-related sequences | 3,843 | 718,550 | 0.2 |
RNA gene | 9,518 | 894,067 | 0.2 |
Simple repeat | 708,557 | 43,187,745 | 11.6 |
Low complexity | 43,113 | 2,506,135 | 0.7 |
Unclassified & Undefined | 21,574 | 7,219,446 | 1.9 |
Total | 1,313,268 | 255,918,518 | 68.9 |
(non-redundant base) | - | 132,443,114 | 35.6 |