Radish Genome Database

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Gene search result

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Detail information

  • Information
      Chr No. Name Length Organism
      R6 Rs293560.1 3030 Raphanus sativus
      Description sdl-1 protein [BLAST2GO] | elongation defective 1 protein / ELD1 protein [AT3G08550]
      Location Rs v1.0_R6:2424882..2427911(+)
      GFF source Rs v1.0
  • Region information
      Type Start End Strand
      mRNA 2424882 2427911 +
      exon 2424882 2425408 +
      CDS 2425028 2425408 +
      exon 2425515 2425664 +
      CDS 2425515 2425664 +
      exon 2425788 2425840 +
      CDS 2425788 2425840 +
      exon 2425939 2426047 +
      CDS 2425939 2426047 +
      exon 2426128 2426262 +
      CDS 2426128 2426262 +
      exon 2426379 2426423 +
      CDS 2426379 2426423 +
      exon 2426531 2426718 +
      CDS 2426531 2426718 +
      exon 2426867 2427008 +
      CDS 2426867 2427008 +
      exon 2427125 2427171 +
      CDS 2427125 2427171 +
      exon 2427291 2427378 +
      CDS 2427291 2427378 +
      exon 2427467 2427911 +
      CDS 2427467 2427712 +

Sequence

  • Nucleotide sequence
    • >Rs293560
      ATGAAATCGATGCACCGAGCTCCCCTAATCTCTTCTTCCTCCTCCTCTTCCTCAAGCAACTCTTTCGTCT
      CAAGGCTTCTCCTTCTATTGACTCTCCTCCCAGTCTCCCTCGCCTGCCTCGCCTTCGTCCTCCAATGGCG
      AGGCGGCGGCCTCGCCGATCCCGCCTCCGCTTCCATCGCCTCCTCGACCTCAGTCCCTGGAAGCGTCGGC
      TCCGATCTCAACCACGAGGTGTTTCCGGGGATGGAGACTGTTTCATCCGTCTCCCCGAAAGCTCACCAGT
      CCTCATCATCAGACTGCTCGAATCTAGCTAGAAGCTCTTCCCCTTCGTTTCCTTACTACGGTGATTGGAA
      GTTCGGTGTTGATTCTAACTTAAAGCCTAAGATATGTATAACGACTAGCACATCAGCAGGATTGGATCAG
      ATTTTGCCGTGGATGTTCTACCATAAGGTTCTTGGCGTCTCCACTTTTTTCCTTTTCGTTGAAGGGAAAG
      CTGCTACGCCCGCCATCTCTAAAGTGCTCGAGTCTATTCCTGGGGTTAAGGTGATATACAGGACAAAAGA
      TCTAGAGGAGAAGCAGGCAAAGAGTCGGATTTGGAATGAGACGTGGCTATCTTCGTTCTTTTACAAGCCA
      TGCAATTACGAGTTGTTTGTTAAGCAATCTCTCAACATGGAAATGGCTATTGTCATGGCAAGGGATGCGG
      GCATGGAATGGATACTTCATCTTGATACAGATGAGCTGATATACCCAGCAGGTGCTCGTGAGTACTCGTT
      GAGACGGTTGCTTCTTGATGTTCCTCCAAATGTGGATATGGTTATTTTCCCAAATTATGAAAGCAGCGTA
      GAAAGAGATGATATCAAGGATCCTTTCACAGAGGTGTCAATGTTTAAAAAGAACTATGACCATCTTCCAA
      AAGATACATATTTTGGAATGTACAAAGAAGCAACCCGAAACAATCCAAACTACTTCTTGACTTATGGAAA
      CGGCAAATCAGTTGCTCGGGTTCAAGACCACCTCCGACCAAATGGAGCACACAGATGGCATAATTACATG
      AAAACTCCCAATGAGATAAAACTGGAGGAGGCTGCTGTCTTACACTACACATATGCCAAGTTCTCTGACC
      TAACATCCAGGCGTGACCGATGTGGCTGCAAGCCTACAAAAGAAGACGTGAAAAGATGCTTTATGTTGGA
      TTTCGATAGATCTGCATTTATAATTGCGTCAACAGCAACTGAAGATGAAATGATAAGCTGGTACCGTGAA
      CATGTTGTGTGGGGAGACAAAGAGGTGAAGATGAAACTCCTTAGGAAGGGTATTCTGACTCGCATTTATT
      CACCAATGGTTGTTATACAAGCATTGAAAGAGTCTGGTGTGTTCAGCTCGGTTGTCTCATCAGCTTCAAC
      AAATCTTTCAAAGAAACAGTTCTTAGCATCAATGAACAAAAGCAACTCTTCATCTGATTCCCTTCCTTCA
      AAGGAAAAGGAGTCTCAGGGCGTCTCAGCAAGGCACCTTCTAGGAACTGAATCAGCTATCCCTCCTTTAT
      CACCTCCTGGGATGGAGCACGCTAGATTTGTCACAGAGGATTAA

  • Protein sequence
    • >Rs293560
      MKSMHRAPLISSSSSSSSSNSFVSRLLLLLTLLPVSLACLAFVLQWRGGGLADPASASIASSTSVPGSVG
      SDLNHEVFPGMETVSSVSPKAHQSSSSDCSNLARSSSPSFPYYGDWKFGVDSNLKPKICITTSTSAGLDQ
      ILPWMFYHKVLGVSTFFLFVEGKAATPAISKVLESIPGVKVIYRTKDLEEKQAKSRIWNETWLSSFFYKP
      CNYELFVKQSLNMEMAIVMARDAGMEWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYESSV
      ERDDIKDPFTEVSMFKKNYDHLPKDTYFGMYKEATRNNPNYFLTYGNGKSVARVQDHLRPNGAHRWHNYM
      KTPNEIKLEEAAVLHYTYAKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSAFIIASTATEDEMISWYRE
      HVVWGDKEVKMKLLRKGILTRIYSPMVVIQALKESGVFSSVVSSASTNLSKKQFLASMNKSNSSSDSLPS
      KEKESQGVSARHLLGTESAIPPLSPPGMEHARFVTED

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